Variant report

Variant	rs10499706
Chromosome Location	chr7:53026365-53026366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11496197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771582	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320888	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13223422	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224899	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13226878	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13235439	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247198	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556689	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34346616	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34660425	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35313212	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36066816	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41339249	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71544150	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812171	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831001	chr7:53003534-53152783	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv607008	chr7:53009355-53068819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv464449	chr7:53009493-53026365	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv607009	chr7:53009493-53026365	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv888034	chr7:53026365-53611898	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53017200-53026800	Weak transcription	Fetal Heart	heart
2	chr7:53023000-53031000	Enhancers	Placenta	Placenta
3	chr7:53023600-53026800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:53023600-53027200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:53023600-53040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:53024600-53026400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:53024600-53027600	Enhancers	Ovary	ovary
8	chr7:53024800-53026400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:53025000-53026600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:53025000-53026800	Weak transcription	HUVEC	blood vessel
11	chr7:53025600-53027200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:53025600-53027400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:53025600-53030000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:53025800-53026400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:53025800-53026800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:53025800-53027600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:53025800-53027800	Enhancers	Fetal Intestine Small	intestine
18	chr7:53026000-53028200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:53026200-53026400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:53026200-53027200	Enhancers	Fetal Intestine Large	intestine
21	chr7:53026200-53027400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:53026200-53027400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:53026200-53028000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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