Variant report

Variant	rs10500644
Chromosome Location	chr11:5522175-5522176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:5521753..5525742-chr11:5559297..5561275,3	K562	blood:
2	chr11:5150382..5152243-chr11:5521583..5523771,2	K562	blood:
3	chr11:5520427..5522185-chr11:5616690..5618726,2	K562	blood:
4	chr11:5519637..5522441-chr11:5543101..5545017,2	K562	blood:

Variant related genes	Relation type
ENSG00000121236	Chromatin interaction
ENSG00000258588	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11037542	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11600342	1.00[CHB][hapmap]
rs11600809	1.00[CHB][hapmap]
rs11607314	1.00[CHB][hapmap]
rs11607359	1.00[CHB][hapmap]
rs11607716	1.00[CHB][hapmap]
rs11607755	1.00[CHB][hapmap]
rs16926553	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs16931459	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16931487	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs16931743	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17297624	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17302469	1.00[CHB][hapmap]
rs2879747	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2879825	1.00[CHB][hapmap]
rs317788	1.00[CHB][hapmap]
rs4547124	1.00[ASN][1000 genomes]
rs57098188	1.00[ASN][1000 genomes]
rs61892092	1.00[ASN][1000 genomes]
rs61892115	1.00[ASN][1000 genomes]
rs61892116	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74049578	1.00[ASN][1000 genomes]
rs7950082	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
2	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv832057	chr11:5375585-5576200	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
4	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv467670	chr11:5506034-5550630	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv553240	chr11:5506034-5550630	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
8	nsv553242	chr11:5518911-5522874	Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv553243	chr11:5518911-5525654	Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv553244	chr11:5519195-5522874	Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3455853	chr11:5519576-5524974	Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	esv3455864	chr11:5521282-5523414	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv3455830	chr11:5521498-5523315	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3455808	chr11:5521554-5523244	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv825736	chr11:5521561-5523144	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv3455797	chr11:5521563-5523288	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv3455842	chr11:5521575-5523231	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv4563	chr11:5521589-5523250	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv3455819	chr11:5521617-5523176	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	esv3455875	chr11:5521631-5523174	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv471745	chr11:5521651-5523756	Transcr. at gene 5' and 3'	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
22	esv20454	chr11:5521668-5522950	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv553245	chr11:5521745-5522287	Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv553246	chr11:5521745-5522766	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv553247	chr11:5521745-5522820	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	esv1825272	chr11:5521745-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	esv1832832	chr11:5521745-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	esv1833015	chr11:5521745-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	nsv553248	chr11:5521745-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	nsv553249	chr11:5521849-5522340	Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	nsv553250	chr11:5521849-5522714	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
32	nsv553251	chr11:5521849-5522820	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv553252	chr11:5521849-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
34	nsv553253	chr11:5521900-5522468	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv553254	chr11:5521900-5522714	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
36	nsv553255	chr11:5521900-5522820	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
37	nsv553256	chr11:5521900-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
38	nsv553257	chr11:5521951-5522820	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv825737	chr11:5521992-5523144	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
40	nsv553258	chr11:5522059-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
41	nsv553259	chr11:5522074-5522874	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	esv2761648	chr11:5522151-5522564	Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
43	esv1796636	chr11:5522171-5523593	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
44	esv1827970	chr11:5522171-5523593	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
45	esv1829089	chr11:5522171-5523593	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
46	nsv442597	chr11:5522171-5523593	Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5520200-5526400	Transcr. at gene 5' and 3'	K562	blood

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