Variant report

Variant	rs10502382
Chromosome Location	chr18:8842966-8842967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4798694	0.84[EUR][1000 genomes]
rs7229960	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10502382	TWSG1	cis	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8835800-8844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:8839600-8844600	Weak transcription	Right Ventricle	heart
3	chr18:8839600-8844800	Weak transcription	Fetal Brain Male	brain
4	chr18:8839600-8845000	Weak transcription	Fetal Brain Female	brain
5	chr18:8839800-8844200	Weak transcription	Left Ventricle	heart
6	chr18:8841200-8843400	Enhancers	HMEC	breast
7	chr18:8841200-8845800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr18:8841600-8843200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr18:8841600-8844000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr18:8841800-8845400	Enhancers	NHEK	skin
11	chr18:8841800-8847200	Weak transcription	Right Atrium	heart
12	chr18:8842000-8843400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr18:8842000-8845600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr18:8842400-8847000	Weak transcription	NH-A	brain
15	chr18:8842400-8847200	Weak transcription	Osteobl	bone
16	chr18:8842600-8844600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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