Variant report
Variant | rs10502486 |
---|---|
Chromosome Location | chr18:24736289-24736290 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr18:24587162..24589841-chr18:24735427..24737669,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11083195 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1115811 | 0.83[EUR][1000 genomes] |
rs12456507 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12458849 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12953555 | 0.83[EUR][1000 genomes] |
rs12954928 | 0.83[EUR][1000 genomes] |
rs12956646 | 0.88[EUR][1000 genomes] |
rs12957452 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12958230 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12958264 | 0.88[EUR][1000 genomes] |
rs12958868 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12963367 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs12969203 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12969884 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12970303 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1426873 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs17632975 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs17705635 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2195032 | 0.85[ASN][1000 genomes] |
rs2339329 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34481937 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4321273 | 0.82[EUR][1000 genomes] |
rs4800790 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs62082885 | 0.88[EUR][1000 genomes] |
rs67364402 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8083235 | 0.82[EUR][1000 genomes] |
rs8096346 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs919140 | 0.88[EUR][1000 genomes] |
rs9646527 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9646563 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9748372 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1067103 | chr18:24524011-24760469 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv543668 | chr18:24524011-24760469 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv909473 | chr18:24655235-24792075 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv909474 | chr18:24683823-24832023 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv909475 | chr18:24687324-24776226 | Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv530515 | chr18:24704459-24883897 | Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv909476 | chr18:24722839-24779601 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv909477 | chr18:24727747-24744027 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | esv1810563 | chr18:24727747-24773141 | Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:24730600-24744600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
2 | chr18:24731600-24743400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |