Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28731581..28734602-chr18:28736991..28740120,3	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11081681	0.86[CHB][hapmap]
rs11874090	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap]
rs11874325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11877142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11877211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12455973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12458919	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12606879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12606918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12608367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1982161	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1982162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2217989	0.86[CHB][hapmap]
rs2246736	0.82[CHB][hapmap]
rs2246737	0.86[CHB][hapmap]
rs2249810	0.86[CHB][hapmap]
rs2577072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2577074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2577075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2851999	0.86[CHB][hapmap]
rs2852001	0.82[CHB][hapmap]
rs3786167	0.86[CHB][hapmap]
rs3786168	0.82[CHB][hapmap]
rs3786169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7238483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28710600-28740800	Weak transcription	Primary T cells from cord blood	blood
2	chr18:28726600-28734000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:28730400-28740800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:28730600-28737400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:28730600-28742600	Weak transcription	Esophagus	oesophagus

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