Variant report

Variant	rs10504152
Chromosome Location	chr8:54130115-54130116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10090337	0.87[ASN][1000 genomes]
rs10094852	0.87[ASN][1000 genomes]
rs10095237	0.87[ASN][1000 genomes]
rs10097082	0.87[ASN][1000 genomes]
rs10099942	0.87[ASN][1000 genomes]
rs10104814	0.91[ASN][1000 genomes]
rs10105801	0.87[ASN][1000 genomes]
rs10109762	0.92[CEU][hapmap];0.87[ASN][1000 genomes]
rs11984673	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11988467	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11992022	0.87[ASN][1000 genomes]
rs11996091	0.94[ASN][1000 genomes]
rs1365091	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365094	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1425903	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425905	0.84[EUR][1000 genomes]
rs1425906	0.82[EUR][1000 genomes]
rs1425907	0.82[EUR][1000 genomes]
rs1425909	0.83[AMR][1000 genomes]
rs1425910	0.83[AMR][1000 genomes]
rs16918825	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16918835	0.87[ASN][1000 genomes]
rs16918853	0.87[ASN][1000 genomes]
rs16918857	0.87[ASN][1000 genomes]
rs16918884	0.87[ASN][1000 genomes]
rs17356028	1.00[ASN][1000 genomes]
rs1895828	0.82[EUR][1000 genomes]
rs1895829	0.82[EUR][1000 genomes]
rs2114103	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3802279	0.87[ASN][1000 genomes]
rs3802280	0.87[ASN][1000 genomes]
rs3802281	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3802282	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55675556	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55738135	0.83[EUR][1000 genomes]
rs6473794	0.83[EUR][1000 genomes]
rs6473795	0.84[EUR][1000 genomes]
rs6990826	0.83[EUR][1000 genomes]
rs6994491	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6998292	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015267	0.82[EUR][1000 genomes]
rs702764	0.92[CEU][hapmap];0.85[ASN][1000 genomes]
rs7816712	0.87[ASN][1000 genomes]
rs7817710	0.87[ASN][1000 genomes]
rs7820807	0.87[ASN][1000 genomes]
rs7824175	0.87[ASN][1000 genomes]
rs7826149	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7827062	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7827334	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7832417	1.00[CEU][hapmap]
rs7844958	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9632842	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs963549	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54127600-54136400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:54129200-54130200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:54129200-54131200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:54129600-54131000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:54130000-54130200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:54130000-54130400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:54130000-54132000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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