Variant report

Variant	rs10504277
Chromosome Location	chr8:59930264-59930265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12547041	0.95[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs12547374	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13273735	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924364	0.95[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs17243368	0.95[ASN][1000 genomes]
rs17243508	0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35833947	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55894441	0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10504277	NMI	trans	lymphoblastoid	seeQTL
rs10504277	TOX	cis	cerebellum	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59921400-59942200	Weak transcription	Gastric	stomach
2	chr8:59926800-59931200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:59926800-59934000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:59927000-59931200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:59927000-59932000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:59927800-59932800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:59927800-59932800	Weak transcription	Osteobl	bone
8	chr8:59928000-59933200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:59928000-59933400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:59928200-59930600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr8:59928200-59932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:59928400-59933000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:59928400-59933200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59928400-59934800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:59928600-59933000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:59928600-59933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:59928600-59941200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:59928600-59941800	Weak transcription	HUVEC	blood vessel
19	chr8:59929000-59932000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr8:59929200-59931400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:59929200-59932800	Weak transcription	NHDF-Ad	bronchial
22	chr8:59929200-59933000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:59929400-59931000	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr8:59929400-59931000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:59929600-59930600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr8:59929600-59931000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:59929600-59931200	Enhancers	Primary B cells from peripheral blood	blood
28	chr8:59929600-59931200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr8:59929600-59931200	Enhancers	GM12878-XiMat	blood
30	chr8:59929600-59933200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:59929800-59930400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr8:59929800-59930800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:59929800-59930800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:59929800-59930800	Weak transcription	Small Intestine	intestine
35	chr8:59929800-59931400	Weak transcription	Brain Germinal Matrix	brain
36	chr8:59929800-59931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:59929800-59932600	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:59929800-59932600	Weak transcription	Fetal Heart	heart
39	chr8:59929800-59939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
41	chr8:59930000-59930400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:59930000-59930400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr8:59930000-59930600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:59930000-59930800	Active TSS	Thymus	Thymus
45	chr8:59930200-59930400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr8:59930200-59930400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr8:59930200-59930600	Enhancers	Dnd41	blood
48	chr8:59930200-59930800	Active TSS	Fetal Thymus	thymus
49	chr8:59930200-59934400	Enhancers	Primary hematopoietic stem cells	blood
50	chr8:59930200-59939600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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