Variant report

Variant	rs10505151
Chromosome Location	chr8:111697701-111697702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10089409	1.00[ASN][1000 genomes]
rs16880778	1.00[ASN][1000 genomes]
rs16880833	1.00[ASN][1000 genomes]
rs16880965	1.00[ASN][1000 genomes]
rs16881021	1.00[ASN][1000 genomes]
rs28519655	1.00[ASN][1000 genomes]
rs4077446	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs62526831	1.00[ASN][1000 genomes]
rs62526842	1.00[ASN][1000 genomes]
rs62526843	1.00[ASN][1000 genomes]
rs62528207	1.00[ASN][1000 genomes]
rs62528208	1.00[ASN][1000 genomes]
rs62528212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528215	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528235	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528241	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001049	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7017275	1.00[CEU][hapmap]
rs7840882	1.00[ASN][1000 genomes]
rs7845363	1.00[ASN][1000 genomes]
rs870637	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831422	chr8:111578949-111755170	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1817780	chr8:111694657-111711197	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1851720	chr8:111694657-111754075	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111696600-111697800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:111696800-111698400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:111697400-111697800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:111697400-111697800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:111697400-111698000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:111697400-111698200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:111697600-111698000	Enhancers	HMEC	breast

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