Variant report

Variant	rs10505958
Chromosome Location	chr12:25206234-25206235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11047791	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11047796	1.00[AFR][1000 genomes]
rs11047803	1.00[AFR][1000 genomes]
rs11047892	1.00[ASW][hapmap]
rs12427285	1.00[AFR][1000 genomes]
rs1497260	1.00[AFR][1000 genomes]
rs1497261	1.00[AFR][1000 genomes]
rs17329424	1.00[ASW][hapmap]
rs1846017	1.00[AFR][1000 genomes]
rs1846018	1.00[AFR][1000 genomes]
rs2291366	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4963601	1.00[ASW][hapmap]
rs4963857	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422312	chr12:24519392-25221686	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1041221	chr12:24880443-25213168	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv541425	chr12:24880443-25213168	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv469173	chr12:24891175-25207653	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv557778	chr12:24891175-25207653	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv1051319	chr12:24921100-25238936	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
12	nsv1037288	chr12:24941350-25238936	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv541428	chr12:24941350-25238936	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv1041218	chr12:24972019-25304356	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv52528	chr12:25204785-25213609	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25204000-25208400	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr12:25204200-25208000	Active TSS	Rectal Smooth Muscle	rectum
3	chr12:25204400-25208200	Active TSS	Adipose Nuclei	Adipose
4	chr12:25204400-25209200	Active TSS	Duodenum Mucosa	Duodenum
5	chr12:25204400-25210200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr12:25204800-25207200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr12:25204800-25207200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:25204800-25207400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:25204800-25207400	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr12:25204800-25208000	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr12:25204800-25209000	Active TSS	Primary T cells fromperipheralblood	blood
12	chr12:25204800-25209000	Active TSS	Thymus	Thymus
13	chr12:25204800-25209000	Active TSS	GM12878-XiMat	blood
14	chr12:25204800-25209600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:25205000-25206800	Active TSS	Dnd41	blood
16	chr12:25205000-25207600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr12:25205000-25207800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:25205000-25207800	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr12:25205000-25207800	Active TSS	Right Atrium	heart
20	chr12:25205000-25209000	Active TSS	Primary B cells from peripheral blood	blood
21	chr12:25205000-25209000	Active TSS	Fetal Thymus	thymus
22	chr12:25205000-25220000	Weak transcription	Spleen	Spleen
23	chr12:25205200-25206400	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr12:25205200-25206600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:25205200-25207000	Active TSS	Primary T cells from cord blood	blood
26	chr12:25205200-25207400	Active TSS	Primary B cells from cord blood	blood
27	chr12:25205200-25207600	Active TSS	Brain Hippocampus Middle	brain
28	chr12:25205200-25207600	Active TSS	Fetal Intestine Large	intestine
29	chr12:25205200-25207600	Active TSS	Fetal Intestine Small	intestine
30	chr12:25205400-25207000	Active TSS	Monocytes-CD14+_RO01746	blood
31	chr12:25205400-25207200	Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr12:25205400-25207800	Active TSS	Primary monocytes fromperipheralblood	blood
33	chr12:25205400-25207800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr12:25205600-25206400	Active TSS	Fetal Muscle Leg	muscle
35	chr12:25205600-25206600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr12:25205600-25207600	Active TSS	Small Intestine	intestine
37	chr12:25205600-25207800	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr12:25205800-25206600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr12:25205800-25224800	Weak transcription	Lung	lung
40	chr12:25206000-25207000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr12:25206000-25207200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:25206000-25207200	Weak transcription	Brain Anterior Caudate	brain
43	chr12:25206000-25207200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:25206000-25207400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:25206000-25207400	Weak transcription	Ovary	ovary
46	chr12:25206000-25217600	Weak transcription	Pancreas	Pancrea
47	chr12:25206200-25206400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr12:25206200-25206600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr12:25206200-25206600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr12:25206200-25206600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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