Variant report

Variant	rs10505972
Chromosome Location	chr12:25488194-25488195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10842540	0.88[EUR][1000 genomes]
rs11047971	0.88[EUR][1000 genomes]
rs11615984	0.88[EUR][1000 genomes]
rs12368200	0.88[EUR][1000 genomes]
rs12369788	0.88[EUR][1000 genomes]
rs12579869	0.96[CEU][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs12580850	0.83[EUR][1000 genomes]
rs2029452	0.87[EUR][1000 genomes]
rs34561310	0.88[EUR][1000 genomes]
rs35141130	0.83[EUR][1000 genomes]
rs36051884	0.88[EUR][1000 genomes]
rs4601875	0.92[EUR][1000 genomes]
rs58760211	0.88[EUR][1000 genomes]
rs6487475	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7953098	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961171	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25487000-25491200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:25487200-25488400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:25487400-25488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:25487400-25488800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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