Variant report

Variant	rs10506190
Chromosome Location	chr12:41756377-41756378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11610155	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11615811	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12814844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12822321	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1350434	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs34160372	1.00[AFR][1000 genomes]
rs34548634	1.00[ASN][1000 genomes]
rs35598170	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs882949	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41755000-41759600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:41755200-41756800	Enhancers	Colon Smooth Muscle	Colon
3	chr12:41755400-41756600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:41755400-41756800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:41755400-41757000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:41755400-41757400	Enhancers	Fetal Kidney	kidney
7	chr12:41755400-41760200	Enhancers	Brain Germinal Matrix	brain
8	chr12:41755600-41756600	Enhancers	Brain Cingulate Gyrus	brain
9	chr12:41756000-41756600	Enhancers	Brain Substantia Nigra	brain
10	chr12:41756000-41756800	Enhancers	Brain Angular Gyrus	brain
11	chr12:41756200-41756600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr12:41756200-41757000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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