Variant report
| Variant | rs10506689 |
|---|---|
| Chromosome Location | chr12:75083292-75083293 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:75082737..75083566-chr12:75727830..75728655,2 | MCF-7 | breast: | |
| 2 | chr12:75082582..75083563-chr12:75481520..75482214,2 | MCF-7 | breast: | |
| 3 | chr12:75082779..75083551-chr12:75899376..75900114,2 | MCF-7 | breast: | |
| 4 | chr12:75082796..75083489-chr12:75451709..75452443,2 | MCF-7 | breast: | |
| 5 | chr12:75082733..75083422-chr12:75196794..75197408,2 | MCF-7 | breast: | |
| 6 | chr12:75082770..75083374-chr12:75481266..75482191,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000173401 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10785138 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
| rs10879820 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10879821 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1112143 | 0.93[ASN][1000 genomes] |
| rs11180159 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11180162 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11180164 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11180166 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12231259 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1948988 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2063182 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv427915 | chr12:75047293-75172692 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv832460 | chr12:75082963-75260727 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:75083000-75083400 | Enhancers | Brain Anterior Caudate | brain |
