Variant report

Variant	rs10507273
Chromosome Location	chr12:117152794-117152795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:117151653..117153224-chr12:117153245..117155923,3	MCF-7	breast:
2	chr12:117152671..117155117-chr12:117156029..117158253,2	MCF-7	breast:
3	chr12:117150536..117152971-chr12:117172971..117174579,2	MCF-7	breast:
4	chr12:117151206..117153398-chr12:117162131..117164765,2	K562	blood:
5	chr12:117141331..117144300-chr12:117150494..117153088,2	K562	blood:
6	chr12:117145528..117148245-chr12:117152693..117154607,2	K562	blood:
7	chr12:117150782..117153045-chr12:117153235..117155739,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111412	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10850706	0.85[EUR][1000 genomes]
rs11068156	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11068157	0.89[CEU][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs11068158	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs11068160	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11068161	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12819414	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs182889	0.94[ASN][1000 genomes]
rs2029852	0.83[CHB][hapmap]
rs2468375	0.90[ASN][1000 genomes]
rs339453	0.90[ASN][1000 genomes]
rs339457	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs339460	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4767439	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4767440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314462	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117147200-117153000	Weak transcription	Left Ventricle	heart
2	chr12:117147200-117153000	Weak transcription	HepG2	liver
3	chr12:117147200-117153400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:117147200-117153800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:117147200-117155200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:117147200-117155400	Weak transcription	Right Atrium	heart
7	chr12:117147200-117155800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:117147200-117155800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:117147200-117156400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:117147200-117174000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr12:117147400-117152800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:117147400-117153000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr12:117147400-117153200	Weak transcription	Primary B cells from cord blood	blood
14	chr12:117147400-117153200	Weak transcription	Aorta	Aorta
15	chr12:117147400-117153400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr12:117147400-117153400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr12:117147400-117153400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:117147400-117153800	Weak transcription	Ovary	ovary
19	chr12:117147400-117154200	Weak transcription	Colonic Mucosa	Colon
20	chr12:117147400-117155400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr12:117147400-117155800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:117147400-117156000	Weak transcription	Colon Smooth Muscle	Colon
23	chr12:117147400-117156000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:117147400-117157000	Weak transcription	Right Ventricle	heart
25	chr12:117147400-117158000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:117147400-117173600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr12:117147600-117152800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:117147600-117153200	Weak transcription	Hela-S3	cervix
29	chr12:117147800-117153600	Weak transcription	A549	lung
30	chr12:117148000-117153200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr12:117148200-117154200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:117148400-117152800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr12:117148400-117153200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr12:117148400-117153200	Weak transcription	Placenta	Placenta
35	chr12:117148400-117153400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:117148400-117153400	Weak transcription	HSMM	muscle
37	chr12:117148400-117153600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr12:117148400-117153800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:117148400-117154400	Weak transcription	HUVEC	blood vessel
40	chr12:117148600-117153200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:117148600-117154800	Weak transcription	Psoas Muscle	Psoas
42	chr12:117148600-117155400	Weak transcription	HSMMtube	muscle
43	chr12:117148600-117164200	Weak transcription	Stomach Mucosa	stomach
44	chr12:117148800-117153000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr12:117148800-117153200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:117148800-117153200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr12:117148800-117153400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr12:117148800-117154200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr12:117149000-117153200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr12:117149000-117153200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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