Variant report

Variant	rs10507852
Chromosome Location	chr13:76905589-76905590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12427674	0.97[ASN][1000 genomes]
rs4460956	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73229653	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7982980	0.88[ASN][1000 genomes]
rs7987244	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76899200-76911400	Weak transcription	Aorta	Aorta
2	chr13:76902800-76905800	Enhancers	Fetal Stomach	stomach
3	chr13:76903800-76906400	Enhancers	Rectal Smooth Muscle	rectum
4	chr13:76904200-76911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:76905000-76907000	Enhancers	Colon Smooth Muscle	Colon
6	chr13:76905000-76907000	Enhancers	Fetal Lung	lung
7	chr13:76905200-76912000	Weak transcription	Psoas Muscle	Psoas
8	chr13:76905400-76905800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:76905400-76906000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr13:76905400-76908400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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