Variant report

Variant	rs10508280
Chromosome Location	chr10:4323875-4323876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:4322899..4325604-chr10:4329174..4330972,3	MCF-7	breast:
3	chr10:4232879..4234398-chr10:4321795..4324603,2	MCF-7	breast:
4	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:
5	chr10:3827811..3830194-chr10:4323572..4325399,2	K562	blood:
6	chr10:4320010..4324018-chr10:4702839..4706546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12414707	0.85[AMR][1000 genomes]
rs17132458	0.85[AMR][1000 genomes]
rs17136260	1.00[AFR][1000 genomes]
rs60355832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
3	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:4321200-4325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4321200-4325600	Enhancers	Ovary	ovary
9	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:4321400-4324000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:4321400-4324000	Enhancers	Osteobl	bone
13	chr10:4321400-4324400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr10:4321400-4325000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr10:4321400-4325400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:4321600-4324000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:4321600-4324400	Enhancers	Hela-S3	cervix
19	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
20	chr10:4321600-4327800	Enhancers	NHLF	lung
21	chr10:4322000-4324400	Enhancers	NH-A	brain
22	chr10:4322000-4324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:4322200-4324000	Enhancers	HUVEC	blood vessel
24	chr10:4322200-4325000	Weak transcription	HSMMtube	muscle
25	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:4322200-4326200	Weak transcription	Right Atrium	heart
27	chr10:4322400-4324000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:4322400-4324200	Enhancers	Colonic Mucosa	Colon
29	chr10:4322400-4325000	Enhancers	Left Ventricle	heart
30	chr10:4322600-4324000	Enhancers	HMEC	breast
31	chr10:4322600-4325600	Weak transcription	Fetal Heart	heart
32	chr10:4322800-4324200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:4322800-4324200	Enhancers	Stomach Mucosa	stomach
34	chr10:4322800-4324200	Enhancers	NHEK	skin
35	chr10:4322800-4325200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:4323000-4325000	Enhancers	Psoas Muscle	Psoas
37	chr10:4323000-4325800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:4323200-4325400	Weak transcription	Fetal Stomach	stomach
39	chr10:4323200-4326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:4323400-4324200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr10:4323400-4324200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:4323400-4324200	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr10:4323400-4326200	Weak transcription	Right Ventricle	heart
44	chr10:4323400-4326800	Weak transcription	Esophagus	oesophagus
45	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
46	chr10:4323400-4331000	Weak transcription	Lung	lung
47	chr10:4323600-4324000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr10:4323600-4324000	Weak transcription	HSMM	muscle
49	chr10:4323800-4324200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:4323800-4324200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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