Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11000264	0.81[AFR][1000 genomes]
rs11592770	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592820	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11593309	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11594267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11596918	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245187	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12255275	0.99[ASN][1000 genomes]
rs16925100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16925106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925235	0.81[AFR][1000 genomes]
rs57940938	0.90[ASN][1000 genomes]
rs7088540	0.82[EUR][1000 genomes]
rs7895143	0.98[ASN][1000 genomes]
rs7902101	1.00[ASN][1000 genomes]
rs7905683	1.00[ASN][1000 genomes]
rs7923167	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53707600-53713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:53710200-53711800	Enhancers	Fetal Stomach	stomach
3	chr10:53710400-53711400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:53710600-53711600	Weak transcription	Adipose Nuclei	Adipose
5	chr10:53710600-53711600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:53710600-53713000	Weak transcription	Aorta	Aorta
7	chr10:53710800-53711800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:53710800-53712000	Weak transcription	Psoas Muscle	Psoas
9	chr10:53710800-53712400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:53710800-53713200	Weak transcription	Ovary	ovary
11	chr10:53710800-53713400	Enhancers	Fetal Lung	lung
12	chr10:53711000-53712200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:53711000-53712200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:53711000-53714000	Weak transcription	Left Ventricle	heart
15	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:53711200-53712000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:53711200-53712200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:53711200-53713800	Enhancers	Rectal Smooth Muscle	rectum

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