Variant report

Variant	rs10508969
Chromosome Location	chr10:53854255-53854256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10824033	0.86[ASN][1000 genomes]
rs10824034	0.86[ASN][1000 genomes]
rs10824038	0.80[ASN][1000 genomes]
rs10824048	0.83[ASN][1000 genomes]
rs10824050	0.82[ASN][1000 genomes]
rs10824053	0.80[ASN][1000 genomes]
rs11000791	0.83[ASN][1000 genomes]
rs11000800	0.82[ASN][1000 genomes]
rs11000815	0.85[ASN][1000 genomes]
rs12219130	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12253829	0.81[ASN][1000 genomes]
rs12412155	0.94[ASN][1000 genomes]
rs12414927	0.94[ASN][1000 genomes]
rs16926521	0.94[ASN][1000 genomes]
rs1904011	0.95[ASN][1000 genomes]
rs1904016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904019	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4526728	0.95[ASN][1000 genomes]
rs57233855	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58339586	0.82[ASN][1000 genomes]
rs72634653	0.91[ASN][1000 genomes]
rs72634654	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv467198	chr10:53843374-53923411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv550875	chr10:53843374-53923411	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53846800-53859800	Weak transcription	Aorta	Aorta
2	chr10:53851600-53854600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:53852000-53854400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:53852400-53855400	Weak transcription	Psoas Muscle	Psoas
5	chr10:53852400-53855600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:53853000-53861600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:53853200-53854400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:53853400-53854400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:53854000-53854400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:53854200-53854800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links