Variant report

Variant	rs10510540
Chromosome Location	chr3:24256417-24256418
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24252147..24254879-chr3:24255849..24257374,2	MCF-7	breast:
2	chr3:24255386..24257362-chr3:24260711..24262954,2	K562	blood:
3	chr3:24255862..24257530-chr3:24261420..24262954,2	K562	blood:
4	chr3:24253187..24255607-chr3:24256066..24257783,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4333036	0.83[EUR][1000 genomes]
rs4858588	0.83[EUR][1000 genomes]
rs6792679	0.83[EUR][1000 genomes]
rs6800891	0.83[EUR][1000 genomes]
rs7622171	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24246000-24260400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24246400-24264400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:24251400-24279200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:24252000-24257800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:24252200-24262000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:24252400-24276400	Weak transcription	HepG2	liver
8	chr3:24254200-24257400	Enhancers	Pancreas	Pancrea
9	chr3:24254600-24260000	Weak transcription	NHEK	skin
10	chr3:24254800-24260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:24254800-24261600	Weak transcription	Left Ventricle	heart
12	chr3:24254800-24261800	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:24255000-24262200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:24255000-24268000	Weak transcription	Brain Anterior Caudate	brain
15	chr3:24255200-24260600	Weak transcription	HSMMtube	muscle
16	chr3:24255400-24256800	Enhancers	Stomach Smooth Muscle	stomach
17	chr3:24255600-24259000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:24255800-24261200	Weak transcription	NHDF-Ad	bronchial
19	chr3:24255800-24261600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:24255800-24262400	Weak transcription	Right Atrium	heart
21	chr3:24256200-24256800	Weak transcription	Psoas Muscle	Psoas
22	chr3:24256200-24257400	Weak transcription	Ovary	ovary
23	chr3:24256200-24261200	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:24256200-24261800	Weak transcription	Lung	lung
25	chr3:24256200-24263800	Weak transcription	Aorta	Aorta
26	chr3:24256400-24260600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:24256400-24262800	Weak transcription	Liver	Liver

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