Variant report

Variant	rs10510562
Chromosome Location	chr3:25381956-25381957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10510563	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10510566	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10510567	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1075410	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11712065	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12496273	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12496365	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12497123	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13080165	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13093379	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1483831	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34015957	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61694119	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25379000-25382600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:25380400-25382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:25380800-25382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:25380800-25384200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:25381000-25389200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:25381800-25382200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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