Variant report

Variant	rs10511296
Chromosome Location	chr3:111197560-111197561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10511297	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11720440	0.96[ASN][1000 genomes]
rs13059063	0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs1498000	0.96[ASN][1000 genomes]
rs1498001	0.96[ASN][1000 genomes]
rs16858119	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202754	0.96[ASN][1000 genomes]
rs17281269	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55896841	0.96[ASN][1000 genomes]
rs62273476	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62273477	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62273520	0.96[ASN][1000 genomes]
rs6437989	0.96[ASN][1000 genomes]
rs6783068	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829839	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap]
rs9863051	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10511296	ZBTB20	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111196200-111199800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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