Variant report

Variant	rs10511389
Chromosome Location	chr3:119074857-119074858
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16829716	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHD][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17281577	1.00[ASW][hapmap];0.88[CHB][hapmap]
rs59257245	0.86[ASN][1000 genomes]
rs73854494	0.86[ASN][1000 genomes]
rs7622158	1.00[LWK][hapmap]
rs9860092	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10511389	CD86	cis	cerebellum	SCAN

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
2	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:119068600-119076200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
6	chr3:119070800-119075800	Weak transcription	Psoas Muscle	Psoas
7	chr3:119071200-119075800	Weak transcription	Right Ventricle	heart
8	chr3:119071400-119078400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:119071600-119076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:119071600-119076000	Weak transcription	Spleen	Spleen
11	chr3:119071600-119087000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:119072000-119075600	Weak transcription	Fetal Heart	heart
13	chr3:119072000-119075600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:119072000-119075800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:119072000-119075800	Weak transcription	Fetal Kidney	kidney
16	chr3:119072000-119076000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:119072000-119076000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:119072000-119078400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:119072000-119085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:119072000-119086800	Weak transcription	HSMMtube	muscle
21	chr3:119072000-119109200	Weak transcription	Brain Substantia Nigra	brain
22	chr3:119072000-119133800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:119072200-119075600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:119072200-119075800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:119072200-119075800	Weak transcription	Ovary	ovary
26	chr3:119072200-119075800	Weak transcription	Osteobl	bone
27	chr3:119072200-119076000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:119072200-119076000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:119072200-119076000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:119072200-119076000	Weak transcription	Right Atrium	heart
31	chr3:119072200-119079200	Weak transcription	Brain Angular Gyrus	brain
32	chr3:119072200-119086000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr3:119072200-119087000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:119072200-119099200	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:119072200-119100600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:119072200-119101400	Weak transcription	HSMM	muscle
37	chr3:119072200-119109600	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:119072200-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:119072400-119075600	Weak transcription	HUVEC	blood vessel
40	chr3:119072400-119075800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:119072400-119075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:119072400-119075800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:119072400-119075800	Weak transcription	GM12878-XiMat	blood
44	chr3:119072400-119076000	Weak transcription	NH-A	brain
45	chr3:119072600-119075800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:119072600-119076000	Weak transcription	Fetal Lung	lung
47	chr3:119072600-119076000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:119072600-119077800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:119072600-119084200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:119072600-119085800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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