Variant report

Variant	rs10513186
Chromosome Location	chr5:14765662-14765663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14765139..14767276-chr5:14879416..14882042,3	MCF-7	breast:
2	chr5:14765384..14768223-chr5:14864661..14866800,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17251667	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317417	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs258360	0.90[CEU][hapmap]
rs55791375	0.94[ASN][1000 genomes]
rs72734707	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937568	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14729200-14791000	Weak transcription	Small Intestine	intestine
2	chr5:14741600-14767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:14744600-14775800	Weak transcription	NH-A	brain
4	chr5:14744800-14776000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:14746000-14790200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:14746200-14775800	Weak transcription	Spleen	Spleen
7	chr5:14746400-14768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:14746600-14776000	Weak transcription	Placenta	Placenta
9	chr5:14749000-14776000	Weak transcription	Esophagus	oesophagus
10	chr5:14751400-14775800	Weak transcription	Pancreas	Pancrea
11	chr5:14751600-14768000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:14752200-14776600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:14753400-14775600	Weak transcription	Lung	lung
14	chr5:14753400-14777000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:14753600-14790000	Weak transcription	Ovary	ovary
16	chr5:14753600-14801600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:14753800-14775800	Weak transcription	Gastric	stomach
18	chr5:14754400-14768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:14754400-14768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:14754800-14766800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:14756000-14766000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:14756800-14779000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:14756800-14780200	Weak transcription	Fetal Stomach	stomach
24	chr5:14756800-14781200	Weak transcription	Thymus	Thymus
25	chr5:14757400-14767000	Weak transcription	Dnd41	blood
26	chr5:14757400-14775800	Weak transcription	HMEC	breast
27	chr5:14758600-14768000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:14758800-14767800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:14758800-14783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:14759200-14790200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:14761000-14767400	Strong transcription	Fetal Intestine Small	intestine
32	chr5:14761000-14768200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:14761000-14776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:14761000-14777800	Weak transcription	HSMMtube	muscle
35	chr5:14761200-14768000	Weak transcription	Brain Angular Gyrus	brain
36	chr5:14761400-14772200	Weak transcription	Aorta	Aorta
37	chr5:14761400-14772200	Weak transcription	Right Ventricle	heart
38	chr5:14761400-14775800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:14761600-14768400	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:14761600-14772400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:14761600-14773800	Weak transcription	Fetal Heart	heart
42	chr5:14761600-14776000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:14761800-14772800	Weak transcription	Brain Anterior Caudate	brain
44	chr5:14762000-14765800	Weak transcription	HepG2	liver
45	chr5:14762000-14767200	Weak transcription	Brain Substantia Nigra	brain
46	chr5:14762000-14768000	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:14762400-14769000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:14762600-14768000	Weak transcription	Adipose Nuclei	Adipose
49	chr5:14762800-14769600	Strong transcription	Osteobl	bone
50	chr5:14763200-14768000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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