Variant report

Variant	rs10513377
Chromosome Location	chr3:150452729-150452730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150450032..150453638-chr3:150459386..150463898,4	K562	blood:
2	chr3:150449791..150453661-chr3:150454357..150457851,6	K562	blood:
3	chr3:150451497..150454639-chr3:150460793..150463672,3	MCF-7	breast:
4	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
5	chr3:150447605..150450016-chr3:150452187..150453951,2	K562	blood:
6	chr3:150442966..150446319-chr3:150451835..150458890,10	K562	blood:
7	chr3:150443385..150447273-chr3:150447378..150454336,8	K562	blood:
8	chr3:150450757..150453638-chr3:150461349..150463898,2	K562	blood:
9	chr12:120638334..120640147-chr3:150451328..150454316,2	MCF-7	breast:
10	chr3:150452566..150460091-chr3:150475752..150483574,15	K562	blood:
11	chr3:150450337..150459570-chr3:150476282..150483839,23	K562	blood:
12	chr3:150451008..150453913-chr3:150469068..150470821,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000089157	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12695960	0.81[ASN][1000 genomes]
rs1533711	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs16862837	0.82[CHB][hapmap]
rs1879420	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1879421	0.82[CHB][hapmap]
rs2116684	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs481236	0.86[CHB][hapmap]
rs502941	0.82[CHB][hapmap]
rs56725170	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594926	0.82[CHB][hapmap]
rs6788895	0.82[CHB][hapmap]
rs6789306	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs73006998	0.87[ASN][1000 genomes]
rs7615125	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7615292	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs7636866	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs939476	1.00[CHB][hapmap];0.85[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:150430800-150454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:150442200-150455200	Weak transcription	Thymus	Thymus
7	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:150443800-150454200	Weak transcription	Fetal Intestine Large	intestine
9	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:150445000-150455000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:150445200-150453800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:150446000-150454200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
15	chr3:150446200-150455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:150446800-150455000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:150448000-150457600	Weak transcription	Aorta	Aorta
19	chr3:150449400-150458400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:150450200-150455200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:150450200-150457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150451000-150457000	Enhancers	Fetal Heart	heart
23	chr3:150451000-150457600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:150451000-150457600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr3:150451200-150452800	Enhancers	Esophagus	oesophagus
26	chr3:150451200-150453200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:150451200-150454600	Enhancers	Liver	Liver
28	chr3:150451200-150455000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:150451200-150456800	Enhancers	Left Ventricle	heart
30	chr3:150451200-150458400	Enhancers	Placenta	Placenta
31	chr3:150451400-150453600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:150451400-150453800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:150451400-150454400	Weak transcription	Gastric	stomach
34	chr3:150451400-150455200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:150451400-150455800	Weak transcription	HSMM	muscle
36	chr3:150451400-150456000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:150451400-150458800	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:150451400-150459200	Weak transcription	HSMMtube	muscle
39	chr3:150451400-150461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:150451600-150453400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:150451600-150453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:150451600-150455600	Weak transcription	NH-A	brain
43	chr3:150451600-150455600	Weak transcription	NHDF-Ad	bronchial
44	chr3:150451600-150457800	Weak transcription	Fetal Stomach	stomach
45	chr3:150451800-150453200	Weak transcription	Lung	lung
46	chr3:150451800-150453400	Weak transcription	Right Atrium	heart
47	chr3:150451800-150453600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:150451800-150453600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr3:150451800-150453600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:150451800-150453800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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