Variant report

Variant	rs10513394
Chromosome Location	chr3:151084478-151084479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151082763..151084486-chr3:151089231..151091784,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1220997	1.00[CEU][hapmap]
rs1221004	1.00[CEU][hapmap]
rs1463725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16863376	0.84[CHB][hapmap];0.91[GIH][hapmap]
rs2276762	0.86[GIH][hapmap]
rs2276763	0.91[GIH][hapmap]
rs3821662	0.95[GIH][hapmap]
rs62285877	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:151064400-151089200	Weak transcription	NHLF	lung
3	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:151072400-151089800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:151072400-151091400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:151072600-151099800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:151075400-151099800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:151075600-151136400	Weak transcription	Fetal Brain Female	brain
12	chr3:151075800-151084600	Weak transcription	Dnd41	blood
13	chr3:151075800-151091200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:151075800-151101200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:151075800-151101400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:151079800-151105400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:151080400-151098200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:151080400-151101600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:151080400-151105400	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:151080800-151085400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:151081000-151088600	Weak transcription	NHDF-Ad	bronchial
22	chr3:151081000-151094600	Weak transcription	Placenta	Placenta
23	chr3:151081400-151085000	Weak transcription	Osteobl	bone
24	chr3:151081600-151085000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:151082000-151085000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:151082000-151087200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:151082400-151095600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:151082800-151085400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:151083000-151110400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:151083200-151089800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:151083400-151084600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:151083600-151084600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr3:151083600-151085000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:151084200-151095800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:151084400-151085400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:151084400-151098400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:151084400-151101600	Weak transcription	Brain Angular Gyrus	brain
38	chr3:151084400-151109200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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