Variant report

Variant	rs10514203
Chromosome Location	chr5:80373479-80373480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80373079..80374953-chr5:80383065..80385003,2	K562	blood:
2	chr10:6701965..6702466-chr5:80373009..80373509,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16878414	0.93[ASW][hapmap];0.85[CEU][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211275	0.94[EUR][1000 genomes]
rs6869328	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830360	chr5:80283278-80446040	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80319600-80374200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:80338200-80376200	Weak transcription	NHLF	lung
3	chr5:80339800-80374200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:80343200-80394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:80344800-80382600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:80353600-80375400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:80354200-80382400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:80356600-80374600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:80361400-80374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:80361400-80374600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:80361400-80374600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:80361600-80374200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:80361600-80374200	Weak transcription	Brain Substantia Nigra	brain
14	chr5:80361600-80374600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:80363200-80374600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:80364200-80384200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:80364200-80386200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:80364600-80382800	Weak transcription	Gastric	stomach
19	chr5:80365200-80374600	Weak transcription	Fetal Intestine Small	intestine
20	chr5:80366200-80374600	Weak transcription	Ovary	ovary
21	chr5:80366800-80374400	Weak transcription	Adipose Nuclei	Adipose
22	chr5:80367600-80374600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:80368000-80374200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:80368600-80374600	Strong transcription	Primary T cells from cord blood	blood
25	chr5:80368800-80384200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr5:80370000-80374600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr5:80370800-80374600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:80371000-80374200	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:80371000-80375600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:80371200-80374600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:80371400-80373800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:80371400-80374400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:80371600-80376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr5:80371600-80376200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:80371800-80374400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr5:80372000-80379000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:80372800-80377600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:80373000-80373800	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr5:80373000-80383600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:80373400-80374400	Weak transcription	HepG2	liver

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