Variant report
| Variant | rs10514529 |
|---|---|
| Chromosome Location | chr16:82143687-82143688 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:82137826..82139962-chr16:82141084..82143909,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263636 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11647840 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16956386 | 1.00[AMR][1000 genomes] |
| rs16956423 | 1.00[AMR][1000 genomes] |
| rs2955159 | 0.86[GIH][hapmap] |
| rs2955162 | 0.85[JPT][hapmap] |
| rs60408319 | 0.89[ASN][1000 genomes] |
| rs60989778 | 1.00[AMR][1000 genomes] |
| rs7185828 | 1.00[AMR][1000 genomes] |
| rs7189803 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7198862 | 1.00[AMR][1000 genomes] |
| rs7200446 | 1.00[AMR][1000 genomes] |
| rs7201456 | 1.00[AMR][1000 genomes] |
| rs7206858 | 1.00[AMR][1000 genomes] |
| rs73604922 | 1.00[AMR][1000 genomes] |
| rs73604929 | 1.00[AMR][1000 genomes] |
| rs73604940 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73604944 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73604948 | 1.00[AMR][1000 genomes] |
| rs8054798 | 1.00[AMR][1000 genomes] |
| rs8059196 | 1.00[AMR][1000 genomes] |
| rs8191152 | 1.00[AMR][1000 genomes] |
| rs8191207 | 1.00[JPT][hapmap] |
| rs8191220 | 1.00[JPT][hapmap] |
| rs8191246 | 1.00[JPT][hapmap] |
| rs9673938 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058368 | chr16:82029516-82152788 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv532598 | chr16:82034475-82738733 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv532599 | chr16:82074439-82926863 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv1061709 | chr16:82093183-82159867 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv457578 | chr16:82136566-82197883 | Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv573366 | chr16:82136566-82197883 | Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 7 | nsv573367 | chr16:82140561-83040846 | Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:82143400-82144400 | Enhancers | HepG2 | liver |
