Variant report

Variant	rs10515210
Chromosome Location	chr5:75025214-75025215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10035878	1.00[EUR][1000 genomes]
rs10037667	1.00[EUR][1000 genomes]
rs11955568	1.00[GIH][hapmap]
rs11960610	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.97[AFR][1000 genomes]
rs16872793	1.00[AFR][1000 genomes]
rs5744606	1.00[CEU][hapmap]
rs7711096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv830353	chr5:74961520-75152609	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75024200-75026200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:75024400-75026200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:75024600-75025400	Enhancers	Brain Hippocampus Middle	brain
4	chr5:75024600-75025800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:75024800-75025600	Enhancers	Duodenum Mucosa	Duodenum
6	chr5:75024800-75025600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr5:75024800-75026200	Enhancers	Pancreas	Pancrea
8	chr5:75025000-75025800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:75025000-75026000	Enhancers	Brain Angular Gyrus	brain
10	chr5:75025000-75026200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr5:75025000-75026200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:75025200-75026000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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