The 2.0 version of rSNPBase

Variant report

Variant rs10515222
Chromosome Location chr5:94415916-94415917
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:94404600-94416200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr5:94407000-94417200 Weak transcription Gastric stomach
3 chr5:94407000-94423600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:94412400-94417200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr5:94413600-94418200 Active TSS Brain Anterior Caudate brain
6 chr5:94413800-94417400 Active TSS GM12878-XiMat blood
7 chr5:94414200-94417800 Active TSS Duodenum Smooth Muscle Duodenum
8 chr5:94414400-94417400 Active TSS HUVEC blood vessel
9 chr5:94414400-94417600 Active TSS Duodenum Mucosa Duodenum
10 chr5:94414600-94416200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr5:94414600-94417600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr5:94414800-94416400 Flanking Active TSS Dnd41 blood
13 chr5:94414800-94417400 Active TSS Muscle Satellite Cultured Cells --
14 chr5:94415000-94416600 Flanking Active TSS Primary hematopoietic stem cells blood
15 chr5:94415200-94416200 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr5:94415200-94416200 Enhancers Cortex derived primary cultured neurospheres brain
17 chr5:94415200-94417600 Active TSS Primary monocytes fromperipheralblood blood
18 chr5:94415400-94417400 Active TSS Monocytes-CD14+_RO01746 blood
19 chr5:94415600-94416000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr5:94415600-94416200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
21 chr5:94415600-94417000 Active TSS Primary B cells from cord blood blood
22 chr5:94415600-94417800 Active TSS Fetal Thymus thymus
23 chr5:94415600-94417800 Active TSS Rectal Mucosa Donor 29 rectum
24 chr5:94415600-94417800 Active TSS HMEC breast
25 chr5:94415800-94416000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr5:94415800-94416000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr5:94415800-94416000 Flanking Active TSS Thymus Thymus
28 chr5:94415800-94416000 Flanking Active TSS A549 lung
29 chr5:94415800-94416200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr5:94415800-94416200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
31 chr5:94415800-94416200 Flanking Active TSS Primary T cells from cord blood blood
32 chr5:94415800-94416200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
33 chr5:94415800-94416200 Flanking Active TSS Adipose Nuclei Adipose
34 chr5:94415800-94416200 Flanking Active TSS Hela-S3 cervix
35 chr5:94415800-94416600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
36 chr5:94415800-94417000 Enhancers HUES48 Cell Line embryonic stem cell
37 chr5:94415800-94417200 Active TSS Primary T helper cells PMA-I stimulated --
38 chr5:94415800-94417200 Active TSS Primary mononuclear cells fromperipheralblood Blood
39 chr5:94415800-94417200 Active TSS Fetal Intestine Large intestine
40 chr5:94415800-94417200 Active TSS NHEK skin
41 chr5:94415800-94417200 Active TSS Osteobl bone
42 chr5:94415800-94417400 Active TSS Skeletal Muscle Female skeletal muscle
43 chr5:94415800-94417400 Active TSS NHLF lung
44 chr5:94415800-94417600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
45 chr5:94415800-94417600 Active TSS Fetal Muscle Leg muscle
46 chr5:94415800-94417800 Active TSS Brain Cingulate Gyrus brain
47 chr5:94415800-94417800 Active TSS Pancreatic Islets Pancreatic Islet
48 chr5:94415800-94417800 Active TSS Fetal Stomach stomach
49 chr5:94415800-94417800 Active TSS Rectal Mucosa Donor 31 rectum
50 chr5:94415800-94417800 Active TSS Right Atrium heart

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Last update: Aug 31, 2015