Variant report

Variant	rs10515255
Chromosome Location	chr5:96521575-96521576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:96518678..96521273-chr5:96521348..96524678,3	MCF-7	breast:
2	chr5:96521334..96524159-chr5:96530024..96533344,3	K562	blood:
3	chr5:96521057..96523981-chr5:96536109..96539029,2	K562	blood:
4	chr5:96519642..96521582-chr5:96527509..96529068,2	MCF-7	breast:
5	chr5:96520831..96523398-chr5:96524932..96527174,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248758	Chromatin interaction
ENSG00000251513	Chromatin interaction
ENSG00000058729	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11135492	1.00[ASN][1000 genomes]
rs11950429	1.00[ASN][1000 genomes]
rs11953510	1.00[ASN][1000 genomes]
rs12055195	1.00[ASN][1000 genomes]
rs12109601	1.00[ASN][1000 genomes]
rs12187005	1.00[ASN][1000 genomes]
rs12188395	1.00[ASN][1000 genomes]
rs13153707	1.00[ASN][1000 genomes]
rs13155794	1.00[ASN][1000 genomes]
rs13158924	1.00[ASN][1000 genomes]
rs13163725	1.00[ASN][1000 genomes]
rs13169233	1.00[ASN][1000 genomes]
rs13176081	1.00[ASN][1000 genomes]
rs13177167	1.00[ASN][1000 genomes]
rs13179188	1.00[ASN][1000 genomes]
rs1592764	1.00[ASN][1000 genomes]
rs17629683	1.00[ASN][1000 genomes]
rs34529618	1.00[ASN][1000 genomes]
rs35263065	1.00[ASN][1000 genomes]
rs35648410	1.00[ASN][1000 genomes]
rs35715451	1.00[ASN][1000 genomes]
rs35807449	1.00[ASN][1000 genomes]
rs35887125	1.00[ASN][1000 genomes]
rs36052400	1.00[ASN][1000 genomes]
rs36062085	1.00[ASN][1000 genomes]
rs36091077	1.00[ASN][1000 genomes]
rs59936742	1.00[ASN][1000 genomes]
rs62377109	1.00[ASN][1000 genomes]
rs6556954	1.00[ASN][1000 genomes]
rs6862780	1.00[ASN][1000 genomes]
rs71654361	1.00[ASN][1000 genomes]
rs71654362	1.00[ASN][1000 genomes]
rs71654363	1.00[ASN][1000 genomes]
rs72777604	1.00[ASN][1000 genomes]
rs72777610	1.00[ASN][1000 genomes]
rs7341048	1.00[ASN][1000 genomes]
rs7703709	1.00[ASN][1000 genomes]
rs7711047	1.00[ASN][1000 genomes]
rs7718270	1.00[ASN][1000 genomes]
rs7721798	1.00[ASN][1000 genomes]
rs7723911	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv882391	chr5:96496189-96533469	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv882392	chr5:96496189-96546238	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv882393	chr5:96496189-96567950	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10515255	FAM172A	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96519200-96526200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:96519800-96521800	Enhancers	HepG2	liver
3	chr5:96520000-96521600	Enhancers	Fetal Intestine Large	intestine
4	chr5:96520000-96522800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:96520000-96523200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:96520000-96528200	Weak transcription	NHEK	skin
7	chr5:96520000-96531600	Weak transcription	HSMM	muscle
8	chr5:96520000-96534800	Weak transcription	Left Ventricle	heart
9	chr5:96520200-96523200	Weak transcription	Lung	lung
10	chr5:96520200-96524600	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:96520200-96524800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:96521000-96521600	Enhancers	Fetal Brain Female	brain
13	chr5:96521000-96524400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:96521400-96521600	Enhancers	Liver	Liver
15	chr5:96521400-96521600	Enhancers	Duodenum Mucosa	Duodenum
16	chr5:96521400-96521600	Enhancers	Fetal Intestine Small	intestine
17	chr5:96521400-96521600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr5:96521400-96521600	Enhancers	Ovary	ovary
19	chr5:96521400-96521600	Enhancers	Pancreas	Pancrea
20	chr5:96521400-96521600	Enhancers	Psoas Muscle	Psoas
21	chr5:96521400-96521600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:96521400-96521600	Flanking Active TSS	Dnd41	blood
23	chr5:96521400-96522800	Strong transcription	Primary B cells from cord blood	blood

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