Variant report

Variant	rs10515319
Chromosome Location	chr5:101330106-101330107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035215	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10035613	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10035711	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10038158	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10038297	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10039756	0.92[EUR][1000 genomes]
rs10039885	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10043437	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10052084	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10076709	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10479094	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11956721	0.91[EUR][1000 genomes]
rs17144821	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17325968	0.81[EUR][1000 genomes]
rs2400570	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28588602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4501312	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4562019	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6871312	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6871655	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875743	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6881469	0.92[EUR][1000 genomes]
rs6886984	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6887793	0.94[EUR][1000 genomes]
rs6889856	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73177147	0.92[EUR][1000 genomes]
rs73177180	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73177187	0.89[EUR][1000 genomes]
rs9327693	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760962	chr5:100776199-101485581	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882496	chr5:101066107-101507854	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv882497	chr5:101090013-101475506	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv995004	chr5:101148890-101423754	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882500	chr5:101163807-101341123	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv524531	chr5:101178314-101412612	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427727	chr5:101185774-101365964	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1033788	chr5:101227917-101378215	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv882501	chr5:101291960-101341123	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv882502	chr5:101291960-101392473	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv33986	chr5:101292483-101362582	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv3333766	chr5:101329974-101330169	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101329000-101331000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr5:101329800-101332800	Enhancers	Fetal Intestine Small	intestine
3	chr5:101330000-101331000	Enhancers	Fetal Intestine Large	intestine

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