Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516347	0.82[JPT][hapmap];0.91[AFR][1000 genomes]
rs10516348	0.91[AFR][1000 genomes]
rs10516354	0.82[JPT][hapmap]
rs16867613	0.82[JPT][hapmap];0.91[AFR][1000 genomes]
rs16867614	0.82[JPT][hapmap];0.91[AFR][1000 genomes]
rs16869447	1.00[MKK][hapmap];0.88[AFR][1000 genomes]
rs16869450	0.88[AFR][1000 genomes]
rs16869454	0.82[JPT][hapmap]
rs16869455	0.82[JPT][hapmap]
rs16869457	0.82[JPT][hapmap];0.90[AFR][1000 genomes]
rs16869461	0.82[JPT][hapmap];0.84[LWK][hapmap]
rs16869465	0.91[AFR][1000 genomes]
rs16869475	0.82[JPT][hapmap];0.91[AFR][1000 genomes]
rs16869481	0.89[ASW][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[AFR][1000 genomes]
rs1951740	0.82[JPT][hapmap]
rs56967065	0.90[AFR][1000 genomes]
rs61114792	0.90[AFR][1000 genomes]
rs6832019	0.96[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6833323	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7661055	0.82[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs7668570	0.87[AFR][1000 genomes]
rs7668724	0.86[AFR][1000 genomes]
rs7668991	0.91[AFR][1000 genomes]
rs7673645	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7674173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
2	chr4:20291800-20300200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:20291800-20319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:20292400-20305200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:20296600-20304000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:20298200-20298800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:20298200-20299000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20298200-20302000	Enhancers	Osteobl	bone
9	chr4:20298400-20299400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:20298600-20298800	Enhancers	NHDF-Ad	bronchial
11	chr4:20298600-20299400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:20298600-20299800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:20298600-20300600	Enhancers	Fetal Lung	lung

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