Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004890	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11722935	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11942368	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11944586	0.82[CEU][hapmap]
rs11944745	0.89[CEU][hapmap]
rs11946264	0.84[CEU][hapmap]
rs12642593	0.82[CEU][hapmap]
rs12643105	0.81[CEU][hapmap]
rs12648787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1460475	1.00[CEU][hapmap]
rs1460478	0.89[CEU][hapmap]
rs1827594	0.88[CEU][hapmap]
rs2134751	0.90[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs2279673	0.89[CEU][hapmap]
rs2323070	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2323072	0.85[ASN][1000 genomes]
rs41385945	0.89[CEU][hapmap]
rs4697222	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835261	0.81[CEU][hapmap]
rs7662641	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary
2	chr4:21624000-21627200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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