Variant report

Variant	rs10516399
Chromosome Location	chr4:21754742-21754743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11721958	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838195	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21751600-21755200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:21752200-21764600	Weak transcription	HMEC	breast
3	chr4:21752400-21755000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:21753200-21754800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:21753200-21755200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:21753600-21755200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:21754000-21754800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:21754000-21755000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:21754000-21755400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:21754000-21755600	Enhancers	Fetal Heart	heart
11	chr4:21754200-21755000	Weak transcription	Ovary	ovary
12	chr4:21754200-21755800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:21754400-21755000	Enhancers	Fetal Lung	lung
14	chr4:21754400-21755400	Enhancers	Colon Smooth Muscle	Colon
15	chr4:21754600-21755400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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