Variant report

Variant	rs10516560
Chromosome Location	chr4:111054395-111054396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111049724..111051919-chr4:111052484..111054456,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41364344	0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6835929	1.00[MKK][hapmap]
rs7689465	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:111030000-111060800	Weak transcription	A549	lung
3	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:111038200-111056400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:111040400-111066800	Weak transcription	Esophagus	oesophagus
8	chr4:111041200-111056600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:111041400-111059400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:111041800-111070600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:111042000-111080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:111042000-111084200	Weak transcription	NHLF	lung
13	chr4:111042800-111065200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:111044200-111055400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:111048400-111054800	Weak transcription	Primary T cells from cord blood	blood
16	chr4:111049600-111067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:111050200-111054600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:111050200-111086600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:111051000-111054600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:111051000-111055200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:111051400-111057200	Weak transcription	Fetal Thymus	thymus
22	chr4:111051400-111060200	Enhancers	Fetal Intestine Small	intestine
23	chr4:111051400-111061600	Enhancers	Fetal Intestine Large	intestine
24	chr4:111051600-111055600	Enhancers	Stomach Mucosa	stomach
25	chr4:111051600-111056000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr4:111052000-111056400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr4:111052200-111063600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:111052400-111054400	Weak transcription	HMEC	breast
29	chr4:111052400-111056200	Weak transcription	NHEK	skin
30	chr4:111052600-111067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:111053000-111054400	Genic enhancers	K562	blood
32	chr4:111053000-111054800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr4:111053000-111056000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:111053000-111058800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:111053000-111061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr4:111053200-111054400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:111053200-111063600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:111053200-111075200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr4:111053400-111054400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr4:111053400-111056400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:111053400-111056800	Enhancers	Colonic Mucosa	Colon
42	chr4:111053600-111054400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:111053800-111056800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:111053800-111057200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:111054000-111054400	Enhancers	Osteobl	bone
46	chr4:111054000-111054800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr4:111054000-111059400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:111054000-111069000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:111054000-111069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:111054200-111054600	Flanking Active TSS	Duodenum Mucosa	Duodenum

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