Variant report

Variant	rs10516846
Chromosome Location	chr4:90696335-90696336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10516847	0.97[AFR][1000 genomes]
rs12233696	0.81[AFR][1000 genomes]
rs17016083	0.86[AFR][1000 genomes]
rs17016124	0.99[AFR][1000 genomes]
rs17016126	0.82[YRI][hapmap];0.99[AFR][1000 genomes]
rs17016196	0.94[AFR][1000 genomes]
rs34094566	0.81[AFR][1000 genomes]
rs34351491	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs34356244	0.99[AFR][1000 genomes]
rs34747217	0.81[AFR][1000 genomes]
rs35540244	0.93[AFR][1000 genomes]
rs35683448	0.86[AFR][1000 genomes]
rs35771728	0.81[AFR][1000 genomes]
rs35921673	0.93[AFR][1000 genomes]
rs3729594	0.97[AFR][1000 genomes]
rs3775435	0.83[YRI][hapmap];0.97[AFR][1000 genomes]
rs3775437	0.97[AFR][1000 genomes]
rs3775438	0.90[AFR][1000 genomes]
rs3775442	0.83[YRI][hapmap];0.97[AFR][1000 genomes]
rs3775444	0.94[AFR][1000 genomes]
rs3775450	0.96[AFR][1000 genomes]
rs3796662	0.93[AFR][1000 genomes]
rs3822088	0.97[AFR][1000 genomes]
rs3822091	0.97[AFR][1000 genomes]
rs3857054	0.81[AFR][1000 genomes]
rs3857056	0.81[AFR][1000 genomes]
rs3857060	0.82[AFR][1000 genomes]
rs3898322	0.97[AFR][1000 genomes]
rs4635786	0.81[AFR][1000 genomes]
rs57267227	0.81[AFR][1000 genomes]
rs57928386	0.81[AFR][1000 genomes]
rs58877857	0.99[AFR][1000 genomes]
rs61378184	0.81[AFR][1000 genomes]
rs6825073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6842093	0.83[YRI][hapmap]
rs72657741	0.97[AFR][1000 genomes]
rs7699596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs961386	0.83[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90649400-90696400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:90676200-90709200	Weak transcription	HUVEC	blood vessel
3	chr4:90685200-90696400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:90687200-90718400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:90687400-90697800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:90688800-90704800	Weak transcription	Fetal Lung	lung
7	chr4:90691800-90704800	Weak transcription	Brain Angular Gyrus	brain
8	chr4:90693000-90709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:90696000-90696600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:90696200-90696600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:90696200-90696800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr4:90696200-90699000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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