Variant report

Variant	rs10516882
Chromosome Location	chr4:91908576-91908577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10015210	0.88[AFR][1000 genomes]
rs10433958	0.80[YRI][hapmap]
rs10440322	0.89[ASW][hapmap];0.81[LWK][hapmap];0.86[AFR][1000 genomes]
rs10446698	0.92[JPT][hapmap]
rs11097285	0.86[AFR][1000 genomes]
rs1381294	0.92[JPT][hapmap]
rs1461592	0.92[JPT][hapmap]
rs1599457	0.89[YRI][hapmap]
rs17017922	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs28751022	0.86[AFR][1000 genomes]
rs34473363	0.89[ASW][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap]
rs34653559	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4370102	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6827858	0.92[JPT][hapmap]
rs6850834	0.92[JPT][hapmap]
rs71598439	0.84[AFR][1000 genomes]
rs9992030	0.89[ASW][hapmap];0.87[LWK][hapmap];0.80[YRI][hapmap]
rs9992741	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs9995817	0.91[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv998409	chr4:91888883-91915429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879556	chr4:91889469-91941029	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv879557	chr4:91903868-91954105	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1005674	chr4:91908118-91924377	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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