Variant report

Variant	rs10516966
Chromosome Location	chr4:96273563-96273564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10029550	0.84[YRI][hapmap]
rs10516967	0.86[YRI][hapmap]
rs17023523	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96272200-96273600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:96272200-96273600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:96272200-96274000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:96272400-96282400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:96273000-96273600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:96273000-96273600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:96273000-96273600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:96273200-96274200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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