Variant report

Variant	rs10518207
Chromosome Location	chr4:79809991-79809992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79801022..79805808-chr4:79807726..79811074,5	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10022528	0.84[AFR][1000 genomes]
rs10049916	1.00[JPT][hapmap]
rs17003486	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7679125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7680505	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79747200-79815600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:79748800-79823600	Weak transcription	Small Intestine	intestine
3	chr4:79768400-79811400	Weak transcription	Hela-S3	cervix
4	chr4:79779000-79814400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
6	chr4:79784000-79811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:79785000-79832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:79786600-79831800	Weak transcription	Spleen	Spleen
9	chr4:79787400-79811400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:79790200-79810400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:79792400-79811400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:79794200-79810200	Weak transcription	A549	lung
13	chr4:79794200-79811400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:79794200-79831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:79794200-79832000	Weak transcription	Fetal Brain Female	brain
16	chr4:79794200-79832200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
19	chr4:79794400-79814400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
21	chr4:79794800-79832000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:79794800-79858000	Weak transcription	HepG2	liver
24	chr4:79795000-79811200	Weak transcription	Brain Germinal Matrix	brain
25	chr4:79795000-79813800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:79795000-79814000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:79795000-79814000	Weak transcription	NH-A	brain
28	chr4:79795000-79814800	Weak transcription	Brain Substantia Nigra	brain
29	chr4:79795000-79814800	Weak transcription	Thymus	Thymus
30	chr4:79795000-79817400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:79795000-79832200	Weak transcription	Aorta	Aorta
32	chr4:79795000-79838200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:79795200-79814400	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:79795200-79814800	Weak transcription	Ovary	ovary
35	chr4:79795400-79814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:79795400-79814800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:79795400-79832200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:79795400-79832200	Weak transcription	Right Ventricle	heart
39	chr4:79795400-79832400	Weak transcription	Esophagus	oesophagus
40	chr4:79796400-79844800	Weak transcription	Fetal Heart	heart
41	chr4:79796800-79831800	Weak transcription	HMEC	breast
42	chr4:79797000-79814000	Weak transcription	HSMMtube	muscle
43	chr4:79797000-79815000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:79798000-79838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:79798400-79835400	Weak transcription	Brain Angular Gyrus	brain
46	chr4:79799000-79831800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr4:79799200-79858000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:79800200-79814600	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:79800400-79814200	Weak transcription	Brain Anterior Caudate	brain
50	chr4:79801000-79812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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