Variant report

Variant	rs10518433
Chromosome Location	chr4:125338606-125338607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125331266..125334287-chr4:125337725..125339948,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10440406	0.82[EUR][1000 genomes]
rs11098757	0.89[EUR][1000 genomes]
rs11936734	0.89[EUR][1000 genomes]
rs11943459	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11943528	0.80[EUR][1000 genomes]
rs12498640	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506316	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506381	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13101405	0.80[EUR][1000 genomes]
rs13118604	0.81[EUR][1000 genomes]
rs1870113	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4833979	0.86[YRI][hapmap]
rs62320666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320681	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817003	0.82[EUR][1000 genomes]
rs6824755	0.89[EUR][1000 genomes]
rs6855126	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688665	0.88[EUR][1000 genomes]
rs7699211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125331600-125341000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:125332200-125344000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125336000-125339400	Enhancers	NHDF-Ad	bronchial
4	chr4:125336600-125339200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:125336600-125348600	Weak transcription	Psoas Muscle	Psoas
6	chr4:125336800-125341000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:125336800-125344400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:125337000-125344400	Weak transcription	NHLF	lung
9	chr4:125337400-125342800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:125337600-125343600	Weak transcription	Osteobl	bone
11	chr4:125338000-125338800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:125338200-125339400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:125338400-125339200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:125338400-125339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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