Variant report

Variant	rs10518523
Chromosome Location	chr1:76487298-76487299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1146657	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1146659	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1251466	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1251468	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1251469	0.86[AMR][1000 genomes]
rs17598856	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17657280	1.00[AMR][1000 genomes]
rs61771288	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484600-76489400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76484800-76487400	Weak transcription	Fetal Lung	lung
3	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:76485000-76488400	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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