Variant report

Variant	rs10518947
Chromosome Location	chr15:58211651-58211652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16939660	1.00[MEX][hapmap]
rs2899614	1.00[CHB][hapmap]
rs3784261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4646633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4646634	1.00[MEX][hapmap]
rs73420274	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58211800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:58208600-58212000	Weak transcription	Spleen	Spleen
6	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart
7	chr15:58209200-58214800	Weak transcription	Lung	lung
8	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:58209400-58212200	Weak transcription	Left Ventricle	heart
10	chr15:58209400-58213200	Weak transcription	HSMMtube	muscle
11	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
12	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
13	chr15:58210200-58212400	Weak transcription	Fetal Heart	heart
14	chr15:58210200-58213200	Weak transcription	Ovary	ovary
15	chr15:58211000-58214400	Weak transcription	Pancreas	Pancrea
16	chr15:58211200-58214200	Weak transcription	Liver	Liver
17	chr15:58211400-58213200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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