Variant report

Variant	rs10519
Chromosome Location	chr9:101831995-101831996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4742756	0.87[AFR][1000 genomes]
rs4742758	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101813200-101833000	Weak transcription	Lung	lung
3	chr9:101816200-101844200	Weak transcription	Gastric	stomach
4	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
5	chr9:101821800-101834800	Strong transcription	Stomach Smooth Muscle	stomach
6	chr9:101822000-101834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:101822200-101832800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:101822400-101832400	Weak transcription	NHDF-Ad	bronchial
9	chr9:101822400-101837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:101822400-101838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:101824000-101833200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:101825200-101836200	Weak transcription	Fetal Brain Female	brain
13	chr9:101826600-101833200	Weak transcription	Right Ventricle	heart
14	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
15	chr9:101827000-101832400	Strong transcription	Adipose Nuclei	Adipose
16	chr9:101828600-101832200	Strong transcription	Colon Smooth Muscle	Colon
17	chr9:101828600-101832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:101828600-101837000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:101828800-101833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:101828800-101833200	Weak transcription	Right Atrium	heart
21	chr9:101829000-101834600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101829200-101832200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:101829400-101832000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:101829400-101832200	Strong transcription	Placenta	Placenta
25	chr9:101829400-101832400	Weak transcription	HSMM	muscle
26	chr9:101829400-101832400	Weak transcription	NH-A	brain
27	chr9:101829600-101833400	Weak transcription	K562	blood
28	chr9:101829600-101834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:101829800-101833200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:101830000-101832600	Weak transcription	Ovary	ovary
31	chr9:101830000-101837600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:101830600-101832000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:101830600-101832800	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:101830800-101832200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:101830800-101832400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr9:101830800-101832600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr9:101830800-101832600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr9:101830800-101833200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr9:101830800-101833400	Enhancers	Primary T cells from cord blood	blood
40	chr9:101830800-101833400	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr9:101831000-101832200	Enhancers	Primary T cells fromperipheralblood	blood
42	chr9:101831000-101832200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:101831000-101832200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:101831000-101832200	Enhancers	Dnd41	blood
45	chr9:101831000-101832400	Enhancers	Fetal Thymus	thymus
46	chr9:101831000-101834600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:101831200-101832200	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr9:101831200-101839000	Weak transcription	Colonic Mucosa	Colon
49	chr9:101831400-101832000	Weak transcription	Fetal Stomach	stomach
50	chr9:101831400-101832200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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