Variant report

Variant	rs10519295
Chromosome Location	chr15:51532647-51532648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr15:51532051-51532872	MCF-7	breast:	n/a	n/a
2	EBF1	chr15:51532184-51532680	GM12878	blood:	n/a	n/a
3	GATA3	chr15:51532147-51532786	MCF-7	breast:	n/a	chr15:51532402-51532413
4	EBF1	chr15:51532254-51532718	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51530696..51532648-chr15:51534082..51535623,2	MCF-7	breast:
2	chr15:51532110..51534876-chr15:52120989..52123344,2	MCF-7	breast:

Variant related genes	Relation type
MIR4713	TF binding region
ENSG00000137869	Chromatin interaction
ENSG00000266593	Chromatin interaction
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17522169	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs2899472	1.00[CHB][hapmap]
rs732762	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049644	chr15:51265447-51560445	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51520800-51535800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:51524800-51574000	Weak transcription	HepG2	liver
3	chr15:51529200-51534800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:51529400-51533800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:51531800-51533800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:51532000-51533000	Bivalent Enhancer	Dnd41	blood
7	chr15:51532000-51533600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:51532000-51533800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:51532000-51534000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:51532000-51534000	Genic enhancers	Placenta	Placenta
11	chr15:51532400-51532800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:51532400-51533000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:51532400-51533200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr15:51532400-51533400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:51532400-51533400	Enhancers	GM12878-XiMat	blood
16	chr15:51532400-51533800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:51532400-51533800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr15:51532600-51532800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:51532600-51533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:51532600-51533000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr15:51532600-51533400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:51532600-51533400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:51532600-51533400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:51532600-51533400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:51532600-51533400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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