Variant report

Variant	rs10519544
Chromosome Location	chr5:117561189-117561190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10900722	1.00[ASN][1000 genomes]
rs11241449	1.00[ASN][1000 genomes]
rs11744859	0.81[AMR][1000 genomes]
rs11746027	1.00[ASN][1000 genomes]
rs13162729	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13168790	1.00[ASN][1000 genomes]
rs13186107	1.00[ASN][1000 genomes]
rs13188829	1.00[ASN][1000 genomes]
rs1382702	1.00[ASN][1000 genomes]
rs1382703	1.00[ASN][1000 genomes]
rs1382705	1.00[ASN][1000 genomes]
rs1382706	1.00[ASN][1000 genomes]
rs1382707	1.00[ASN][1000 genomes]
rs1382708	1.00[ASN][1000 genomes]
rs1382711	1.00[ASN][1000 genomes]
rs1382712	1.00[ASN][1000 genomes]
rs1479180	1.00[ASN][1000 genomes]
rs1479181	1.00[ASN][1000 genomes]
rs1479182	1.00[ASN][1000 genomes]
rs1479184	1.00[ASN][1000 genomes]
rs1531595	1.00[ASN][1000 genomes]
rs1531596	1.00[ASN][1000 genomes]
rs1600299	1.00[ASN][1000 genomes]
rs1600300	1.00[ASN][1000 genomes]
rs1600301	1.00[ASN][1000 genomes]
rs1600302	1.00[ASN][1000 genomes]
rs1600304	1.00[ASN][1000 genomes]
rs1600307	1.00[ASN][1000 genomes]
rs17143755	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1842157	1.00[ASN][1000 genomes]
rs1842159	1.00[ASN][1000 genomes]
rs2061882	1.00[ASN][1000 genomes]
rs2061883	1.00[ASN][1000 genomes]
rs2127252	1.00[ASN][1000 genomes]
rs2127253	1.00[ASN][1000 genomes]
rs2127262	1.00[ASN][1000 genomes]
rs2127263	1.00[ASN][1000 genomes]
rs2169939	1.00[ASN][1000 genomes]
rs2169940	1.00[ASN][1000 genomes]
rs2199737	1.00[ASN][1000 genomes]
rs2219818	1.00[ASN][1000 genomes]
rs2416511	1.00[ASN][1000 genomes]
rs2416512	1.00[ASN][1000 genomes]
rs2416513	1.00[ASN][1000 genomes]
rs2416514	1.00[ASN][1000 genomes]
rs28566849	1.00[ASN][1000 genomes]
rs2900116	1.00[ASN][1000 genomes]
rs34074197	1.00[ASN][1000 genomes]
rs35859035	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919878	1.00[ASN][1000 genomes]
rs4270731	1.00[ASN][1000 genomes]
rs4270733	1.00[ASN][1000 genomes]
rs4499871	1.00[ASN][1000 genomes]
rs6595097	1.00[ASN][1000 genomes]
rs6595098	1.00[ASN][1000 genomes]
rs6887046	1.00[ASN][1000 genomes]
rs6887724	1.00[ASN][1000 genomes]
rs6891876	1.00[ASN][1000 genomes]
rs7447485	1.00[ASN][1000 genomes]
rs7448647	1.00[ASN][1000 genomes]
rs7700966	1.00[ASN][1000 genomes]
rs7704669	1.00[ASN][1000 genomes]
rs7704694	1.00[ASN][1000 genomes]
rs7720781	1.00[ASN][1000 genomes]
rs7725490	1.00[ASN][1000 genomes]
rs936569	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1021879	chr5:117386077-117570453	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117559400-117561200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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