Variant report

Variant	rs10519670
Chromosome Location	chr5:120815028-120815029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10038731	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1025303	0.91[EUR][1000 genomes]
rs2115328	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4394153	0.81[EUR][1000 genomes]
rs55680957	0.81[EUR][1000 genomes]
rs55802456	0.89[EUR][1000 genomes]
rs55959921	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55974536	0.91[EUR][1000 genomes]
rs56653439	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57639300	0.89[EUR][1000 genomes]
rs58004380	0.81[EUR][1000 genomes]
rs59704010	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60960339	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62380534	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62382204	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6595299	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72783050	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882803	chr5:120722413-120873947	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882805	chr5:120732139-120818132	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882806	chr5:120741900-120917249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882807	chr5:120758647-120873947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv882808	chr5:120776767-120818132	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv981028	chr5:120809278-120817237	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120813000-120815600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:120813400-120815600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:120813600-120815400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:120813600-120815800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:120814600-120815400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:120814800-120815400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:120814800-120815800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:120815000-120815200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:120815000-120816000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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