Variant report

Variant	rs10519818
Chromosome Location	chr15:33712398-33712399
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11630201	1.00[ASN][1000 genomes]
rs1878300	1.00[ASN][1000 genomes]
rs2251808	1.00[ASN][1000 genomes]
rs2596194	1.00[ASN][1000 genomes]
rs2596196	1.00[ASN][1000 genomes]
rs2596230	0.85[CEU][hapmap]
rs2676067	1.00[ASN][1000 genomes]
rs61304639	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33711200-33713000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:33711200-33713200	Enhancers	Fetal Brain Male	brain
3	chr15:33711200-33716200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:33711400-33713400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:33711600-33712600	Weak transcription	Fetal Brain Female	brain
6	chr15:33712000-33713600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:33712200-33717400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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