Variant report

Variant	rs10519863
Chromosome Location	chr15:34013705-34013706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:34013046-34013743	HUVEC	blood vessel:	n/a	n/a
2	TCF12	chr15:34012907-34013717	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000200008	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10519862	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953951	0.86[ASW][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs74005964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74005965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74005966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034622	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038360	0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038427	0.86[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9302273	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33993600-34016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34002600-34015800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:34003200-34014800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:34003200-34015600	Weak transcription	Brain Anterior Caudate	brain
8	chr15:34003400-34018400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:34004000-34015000	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:34004600-34017400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
12	chr15:34008600-34019200	Weak transcription	Right Atrium	heart
13	chr15:34010200-34014600	Weak transcription	Esophagus	oesophagus
14	chr15:34012400-34014800	Enhancers	NHEK	skin
15	chr15:34012400-34016800	Enhancers	HUVEC	blood vessel
16	chr15:34012600-34014800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:34012600-34015200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:34012600-34015400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:34012800-34014800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:34012800-34015000	Enhancers	HMEC	breast
21	chr15:34013000-34015000	Enhancers	NH-A	brain
22	chr15:34013200-34015200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:34013400-34014000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:34013400-34014400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:34013400-34014800	Enhancers	HSMM	muscle
26	chr15:34013600-34014600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:34013600-34014800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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