Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1181981	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs1181984	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs1181987	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs1181988	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs1181989	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs1181990	0.95[JPT][hapmap]
rs11952278	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653079	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17699243	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs17699303	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs17766441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766892	1.00[CEU][hapmap]
rs17766921	1.00[CEU][hapmap]
rs181958	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap]
rs257907	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs257998	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs258005	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs258007	0.89[JPT][hapmap]
rs3932768	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs51668	0.89[JPT][hapmap]
rs61258371	0.85[EUR][1000 genomes]
rs7381077	0.83[EUR][1000 genomes]
rs759139	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs759140	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs759141	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10520014	SLC27A6	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128260200-128260400	Enhancers	Right Ventricle	heart
2	chr5:128260200-128264800	Enhancers	Fetal Heart	heart

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