Variant report

Variant	rs10520026
Chromosome Location	chr5:128299378-128299379
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10478828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes]
rs10520013	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12517685	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12523161	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17163810	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17766880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes]
rs3863174	0.93[AMR][1000 genomes]
rs4100732	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4836419	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4836421	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4836425	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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