Variant report

Variant	rs10520095
Chromosome Location	chr15:38903312-38903313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:38901614..38903345-chr15:38906817..38909369,2	MCF-7	breast:
2	chr15:38902462..38904762-chr15:38908656..38911078,2	MCF-7	breast:
3	chr15:38884414..38892257-chr15:38898196..38905033,11	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16967100	1.00[AMR][1000 genomes]
rs16967106	1.00[AMR][1000 genomes]
rs6495982	1.00[AMR][1000 genomes]
rs6495983	1.00[AMR][1000 genomes]
rs7175041	1.00[AMR][1000 genomes]
rs74007518	1.00[AMR][1000 genomes]
rs74007523	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv904086	chr15:38829198-38931396	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38896400-38903400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:38901000-38903800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:38901200-38905600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:38901200-38905800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr15:38901200-38905800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:38901200-38905800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:38901200-38906000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:38901200-38913400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:38901600-38903400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:38901600-38903400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:38901600-38904600	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:38902200-38906000	Enhancers	Fetal Thymus	thymus
13	chr15:38902400-38904200	Enhancers	Primary B cells from cord blood	blood
14	chr15:38902600-38903400	Enhancers	Primary T cells from cord blood	blood
15	chr15:38902600-38905000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:38902600-38905800	Enhancers	Thymus	Thymus
17	chr15:38902800-38903400	Enhancers	Fetal Kidney	kidney
18	chr15:38902800-38903600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:38902800-38903600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr15:38902800-38903600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:38902800-38903600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr15:38902800-38905400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr15:38903000-38903400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:38903000-38903600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:38903000-38903600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:38903000-38903600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:38903000-38903600	Enhancers	K562	blood
28	chr15:38903000-38903800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr15:38903000-38904000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr15:38903000-38905600	Enhancers	Dnd41	blood
31	chr15:38903200-38903600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:38903200-38903600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:38903200-38903600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr15:38903200-38904200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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